Eat fermented foods daily (yogurt, kefir, sauerkraut) to seed the gut with probiotics
Ekberg emphasizes that fermentation is a three-pronged gut strategy: (1) probiotics directly inoculate the gut with colonizing species like Bifidobacterium, which can set up long-term residence; (2) the fibrous vegetable matter in ferments like sauerkraut serves as prebiotic food for existing and incoming bacteria; (3) this microbial fermentation produces postbiotics — particularly butyrate — that fuel the enterocytes lining the gut and tighten the intercellular junctions. When junctions are compromised, lipopolysaccharides (LPS) from pathogenic bacteria leak into the blood, causing systemic inflammation that can manifest as anxiety, depression, and metabolic chaos. He highlights that homemade yogurt run for 48–60 hours eats up virtually all lactose, making it safe for lactose-intolerant people, and dramatically increases the live bacterial count and diversity. Kefir is even more complex, with many more bacterial strains and beneficial yeasts. Fermentation also neutralizes problematic plant compounds like phytates and lectins, so even those sensitive to raw veggies may tolerate fermented versions.
Live bacteria from yogurt (Lactobacillus, Bifidobacterium) and kefir (additional strains and yeasts) compete for adhesion sites and nutrients in the gut, suppressing pathogenic species. Some are colonizers that establish permanent residence. The bacteria ferment prebiotic fibers and polyphenols, producing short-chain fatty acids, notably butyrate. Butyrate is the primary fuel for colonocytes, strengthens the intestinal tight junctions via protein synthesis, and thus prevents LPS translocation. The reduction in luminal pH also inhibits pathogen growth. Lactose is broken down during the long fermentation, and anti-nutrients like lectins are partially degraded.
I personally make yogurt at home using a machine, letting it ferment for 48 to 60 hours. It becomes much more sour, loaded with beneficial bacteria, and virtually lactose-free.
Fermentation is mankind's oldest form of preservation. And not just does it preserve it, but in case of yogurt and kefir, what they provide is probiotics. And that means that they have live bacterial species that can seed and diversify the bacterial flora that we have in our guts.

